diff --git a/HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS b/HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS deleted file mode 100644 index 44d66ac..0000000 --- a/HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS +++ /dev/null @@ -1,17 +0,0 @@ - -Whole PDB entry: - -stride 1bed.brk -$ -k - -Residue range: - -stride 2gsq.brk -$ -k -x76 -y202 - -Single chain: - -stride 1alv.brk -$ -k -ra - -Residue range in a chain: - -stride 1bmt.brk -$ -k -ra -x651 -y740 - diff --git a/doc/stride.doc b/doc/stride.doc index b869aa9..893e16a 100644 --- a/doc/stride.doc +++ b/doc/stride.doc @@ -186,6 +186,25 @@ stride 2gls.brk -rabc -cc -o + Examples for contact order calculations: + + + 1. Whole PDB entry: + + stride 1bed.brk -$ -k + + 2. Residue range: + + stride 2gsq.brk -$ -k -x76 -y202 + + 3. Single chain: + + stride 1alv.brk -$ -k -ra + + 4. Residue range in a chain: + + stride 1bmt.brk -$ -k -ra -x651 -y740 + 6. Output format