From 51b3f1890c65f65301499ce454a6efe4eacb7b3d Mon Sep 17 00:00:00 2001 From: josch Date: Wed, 18 Sep 2013 17:18:32 +0200 Subject: [PATCH] move contact order calculation example into doc/stride.doc --- ...USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS | 17 ----------------- doc/stride.doc | 19 +++++++++++++++++++ 2 files changed, 19 insertions(+), 17 deletions(-) delete mode 100644 HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS diff --git a/HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS b/HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS deleted file mode 100644 index 44d66ac..0000000 --- a/HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS +++ /dev/null @@ -1,17 +0,0 @@ - -Whole PDB entry: - -stride 1bed.brk -$ -k - -Residue range: - -stride 2gsq.brk -$ -k -x76 -y202 - -Single chain: - -stride 1alv.brk -$ -k -ra - -Residue range in a chain: - -stride 1bmt.brk -$ -k -ra -x651 -y740 - diff --git a/doc/stride.doc b/doc/stride.doc index b869aa9..893e16a 100644 --- a/doc/stride.doc +++ b/doc/stride.doc @@ -186,6 +186,25 @@ stride 2gls.brk -rabc -cc -o + Examples for contact order calculations: + + + 1. Whole PDB entry: + + stride 1bed.brk -$ -k + + 2. Residue range: + + stride 2gsq.brk -$ -k -x76 -y202 + + 3. Single chain: + + stride 1alv.brk -$ -k -ra + + 4. Residue range in a chain: + + stride 1bmt.brk -$ -k -ra -x651 -y740 + 6. Output format