#include "stride.h" /************************************************* Calculate the hydrogen bond energy as defined by Boobbyer et al., 1989 **************************************************/ void GRID_Energy(float *CA2, float *C, float *O, float *H, float *N, COMMAND *Cmd, HBOND *HBond) { float ProjH[3]; /***** Distance dependence ( 8-6 potential ) ****/ if( Cmd->Truncate && HBond->AccDonDist < RmGRID ) HBond->AccDonDist = RmGRID; HBond->Er = CGRID/pow(HBond->AccDonDist,8.0) - DGRID/pow(HBond->AccDonDist,6.0); /************** Angular dependance ****************/ /* Find projection of the hydrogen on the O-C-CA plane */ Project4_123(O,C,CA2,H,ProjH); /* Three angles determining the direction of the hydrogen bond */ HBond->ti = fabs(180.0 - Ang(ProjH,O,C)); HBond->to = Ang(H,O,ProjH); HBond->p = Ang(N,H,O); /* Calculate both angle-dependent HB energy components Et and Ep */ if( HBond->ti >= 0.0 && HBond->ti < 90.0 ) HBond->Et = cos(RAD(HBond->to))*(0.9+0.1*sin(RAD(2*HBond->ti))); else if( HBond->ti >= 90.0 && HBond->ti < 110.0 ) HBond->Et = K1GRID*cos(RAD(HBond->to))* (pow((K2GRID-pow(cos(RAD(HBond->ti)),2.0)),3.0)); else HBond->Et = 0.0; if( HBond->p > 90.0 && HBond->p < 270.0 ) HBond->Ep = pow(cos(RAD(HBond->p)),2.0); else HBond->Ep = 0.0; /******** Full hydrogen bond energy *********************/ HBond->Energy = 1000.0*HBond->Er*HBond->Et*HBond->Ep; } #define Q -27888.0 /******************************************************** Calculate the energy of polar interaction as defined by Kabsch and Sander (1983) *********************************************************/ void DSSP_Energy(float *Dummy, float *C, float *O, float *H, float *N, COMMAND *Cmd, HBOND *HBond) /* Dummy not used, for compatibility with GRID_Energy */ { HBond->Energy = Q/Dist(O,H) + Q/Dist(C,N) - Q/HBond->AccDonDist - Q/Dist(C,H); }