#include "stride.h" void BetaTurn(CHAIN **Chain, int Cn) { register int i; RESIDUE **r; TURN *t; int CA1, CA4, Tn; float Phi2, Phi3, Psi2, Psi3, Range1 = 30.0, Range2 = 45.0; char TurnType; for( i=0; iNRes-4; i++ ) { r = &Chain[Cn]->Rsd[i]; if( r[1]->Prop->Asn == 'H' || r[2]->Prop->Asn == 'H' || r[1]->Prop->Asn == 'G' || r[2]->Prop->Asn == 'G' || r[1]->Prop->Asn == 'I' || r[2]->Prop->Asn == 'G' || !FindAtom(Chain[Cn],i,"CA",&CA1) || !FindAtom(Chain[Cn],i+3,"CA",&CA4) || Dist(r[0]->Coord[CA1],r[3]->Coord[CA4]) > 7.0 ) continue; Phi2 = r[1]->Prop->Phi; Psi2 = r[1]->Prop->Psi; Phi3 = r[2]->Prop->Phi; Psi3 = r[2]->Prop->Psi; if( TurnCondition(Phi2,-60.0,Psi2,-30,Phi3,-90.0,Psi3,0,Range1,Range2) ) TurnType = '1'; else if( TurnCondition(Phi2,60.0,Psi2,30,Phi3,90.0,Psi3,0,Range1,Range2) ) TurnType = '2'; else if( TurnCondition(Phi2,-60.0,Psi2,120,Phi3,80.0,Psi3,0,Range1,Range2) ) TurnType = '3'; else if( TurnCondition(Phi2,60.0,Psi2,-120,Phi3,-80.0,Psi3,0,Range1,Range2) ) TurnType = '4'; else if( TurnCondition(Phi2,-60.0,Psi2,120,Phi3,-90.0,Psi3,0,Range1,Range2) ) TurnType = '5'; else if( TurnCondition(Phi2,-120.0,Psi2,120,Phi3,-60.0,Psi3,0,Range1,Range2) ) TurnType = '6'; else if( TurnCondition(Phi2,-60.0,Psi2,-30,Phi3,-120.0,Psi3,120,Range1,Range2) ) TurnType = '7'; else TurnType = '8'; if( r[0]->Prop->Asn == 'C' ) r[0]->Prop->Asn = 'T'; if( r[1]->Prop->Asn == 'C' ) r[1]->Prop->Asn = 'T'; if( r[2]->Prop->Asn == 'C' ) r[2]->Prop->Asn = 'T'; if( r[3]->Prop->Asn == 'C' ) r[3]->Prop->Asn = 'T'; Tn = Chain[Cn]->NAssignedTurn; Chain[Cn]->AssignedTurn[Tn] = (TURN *)ckalloc(sizeof(TURN)); t = Chain[Cn]->AssignedTurn[Tn]; strcpy(t->Res1,r[0]->ResType); strcpy(t->Res2,r[3]->ResType); strcpy(t->PDB_ResNumb1,r[0]->PDB_ResNumb); strcpy(t->PDB_ResNumb2,r[3]->PDB_ResNumb); t->TurnType = TurnType; Chain[Cn]->NAssignedTurn++; } } void GammaTurn(CHAIN **Chain, int Cn, HBOND **HBond) { register int i; RESIDUE **r; TURN *t; int Tn; float Phi2, Psi2; char TurnType, Asn; for( i=0; iNRes-2; i++ ) { r = &Chain[Cn]->Rsd[i-1]; Asn = r[2]->Prop->Asn; if( Asn == 'H' || Asn == 'T' || Asn == 'G' || Asn == 'I' || FindBnd(HBond,r[3],r[1]) == ERR || (i > 0 && FindBnd(HBond,r[3],r[0]) != ERR) || (i < Chain[Cn]->NRes-3 && FindBnd(HBond,r[4],r[1]) != ERR) ) continue; Phi2 = r[2]->Prop->Phi; Psi2 = r[2]->Prop->Psi; if( Phi2 > 0.0 && Psi2 < 0.0 ) TurnType = '@'; else if( Phi2 < 0.0 && Psi2 > 0.0 ) TurnType = '&'; else continue; if( r[1]->Prop->Asn == 'C' ) r[1]->Prop->Asn = 'T'; if( r[2]->Prop->Asn == 'C' ) r[2]->Prop->Asn = 'T'; if( r[3]->Prop->Asn == 'C' ) r[3]->Prop->Asn = 'T'; Tn = Chain[Cn]->NAssignedTurn; Chain[Cn]->AssignedTurn[Tn] = (TURN *)ckalloc(sizeof(TURN)); t = Chain[Cn]->AssignedTurn[Tn]; strcpy(t->Res1,r[1]->ResType); strcpy(t->Res2,r[3]->ResType); strcpy(t->PDB_ResNumb1,r[1]->PDB_ResNumb); strcpy(t->PDB_ResNumb2,r[3]->PDB_ResNumb); t->TurnType = TurnType; Chain[Cn]->NAssignedTurn++; } } int TurnCondition(float Phi2,float Phi2S,float Psi2,float Psi2S, float Phi3,float Phi3S,float Psi3,float Psi3S, float Range1,float Range2) { if((IN(Phi2,Phi2S,Range2)==YES && IN(Psi2,Psi2S,Range1)==YES && IN(Phi3,Phi3S,Range1)==YES && IN(Psi3,Psi3S,Range1)==YES) || (IN(Phi2,Phi2S,Range1)==YES && IN(Psi2,Psi2S,Range2)==YES && IN(Phi3,Phi3S,Range1)==YES && IN(Psi3,Psi3S,Range1)==YES) || (IN(Phi2,Phi2S,Range1)==YES && IN(Psi2,Psi2S,Range1)==YES && IN(Phi3,Phi3S,Range2)==YES && IN(Psi3,Psi3S,Range1)==YES) || (IN(Phi2,Phi2S,Range1)==YES && IN(Psi2,Psi2S,Range1)==YES && IN(Phi3,Phi3S,Range1)==YES && IN(Psi3,Psi3S,Range2)==YES) ) return(SUCCESS); return(FAILURE); }