32 lines
1.3 KiB
Text
32 lines
1.3 KiB
Text
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This is the original implementation of the STRIDE algorithm by Dmitrij Frishman
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as presented in:
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- Frishman D, Argos P. Knowledge-Based Protein Secondary Structure Assignment
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Proteins: Structure, Function, and Genetics 23:566-579 (1995)
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From the abstract, STRIDE calculates "protein secondary structure assignments
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form atomic coordinates based on the combined use of hydrogen bond energy and
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statistically derived backbone torsional angle information"
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This program also exists as a webservice at
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http://webclu.bio.wzw.tum.de/stride/
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This distribution also includes nsc by Frank Eisenhaber as presented in:
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- F.Eisenhaber, P.Lijnzaad, P.Argos, M.Scharf "The Double Cubic Lattice
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Method: Efficient Approaches to Numerical Integration of Surface Area and
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Volume and to Dot Surface Contouring of Molecular Assemblies" Journal of
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Computational Chemistry (1994) submitted
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- F.Eisenhaber, P.Argos "Improved Strategy in Analytic Surface Calculation for
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Molecular Systems: Handling of Singularities and Computational Efficiency"
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Journal of Computational Chemistry (1993) v.14, N11, pp-1272-1280
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The nsc component calculates residue solvent accessible areas.
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In 2013, the authors of STRIDE and nsc released the software under the terms of
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the MIT licence.
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For more information on how to use stride, refer to doc/stride.doc
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