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move contact order calculation example into doc/stride.doc

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josch 2013-09-18 17:18:32 +02:00
parent bcc47b09ea
commit 51b3f1890c
2 changed files with 19 additions and 17 deletions
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17
HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS
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@ -1,17 +0,0 @@
Whole PDB entry:
stride 1bed.brk -$ -k
Residue range:
stride 2gsq.brk -$ -k -x76 -y202
Single chain:
stride 1alv.brk -$ -k -ra
Residue range in a chain:
stride 1bmt.brk -$ -k -ra -x651 -y740

19
doc/stride.doc
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@ -186,6 +186,25 @@
stride 2gls.brk -rabc -cc -o stride 2gls.brk -rabc -cc -o
Examples for contact order calculations:
1. Whole PDB entry:
stride 1bed.brk -$ -k
2. Residue range:
stride 2gsq.brk -$ -k -x76 -y202
3. Single chain:
stride 1alv.brk -$ -k -ra
4. Residue range in a chain:
stride 1bmt.brk -$ -k -ra -x651 -y740
6. Output format 6. Output format